Second method using one file: Converting Bruker TopSpin2.1 FID file into JCAMP-DX file via NoteTabLight

Home and Applets > FAQ > About NMR > About File Conversion > Second Method using One File: Bruker TopSpin2.1 FID to JCAMP-DX via NoteTabLight

*** Outline of the second method using one file via NoteTabLight ***

  • (A) Generation of JCAMP-DX file from topSpin2.1 operating system
  • (B) Modification of JCAMP-DX file via NoteTabLight and vice versa
  • (C) Introduction of JCAMP-DX file into topSpin2.1 operating system

(A) Generation of JCAMP-DX file from topSpin2.1 operating system

  1. Consider the 29Si echo train file of nanomacs, already modified by convdta command:
  2. File > Save; check "Save data set in a JCAMP-DX file"
  3. Click OK button
  4. Save the file on the DeskTop of Windows by filling the specify destination form:
  5. A file called 29Si-nanom-4BL.dx appears on the DeskTop of Windows.
    This file is a text file containing NMR parameters and the intensities of the echotrain. The real part of this echotrain followed by the imaginary part are two ASCII series in a single column. The left-hand side of this column contains increasing integer numbers indicating the positions of the intensities. The right-hand side of this column contains the intensities of the echotrain.

(B) Modification of JCAMP-DX file via NoteTabLight

  1. We use MS EXCEL to select the right-hand side of the column containing the intensities of the echotrain. To this end, we apply to the 29Si-nanom-4BL.dx file the procedure for converting two-series ASCII file into two-column (separated by tab character) MS Excel spread sheet document via NoteTabLight.
  2. Now, we select the real part and the imaginary part of the echotrain and paste them to Java applet for denoising.
  3. After the echotrain denoising, we replace the real part and the imaginary part of the echotrain in 29Si-nanom-4BL.dx file by the denoised values which are real numbers.
  4. We change the format of these cells so that the intensities of the echotrain become integer numbers.
  5. The intensities of the echotrain are integer numbers.
  6. We again use MS EXCEL to merge the two columns into a single column. To this end, we apply to the 29Si-nanom-4BL.dx file in PRN format the procedure for converting two-column (separated by tab character) MS Excel spread sheet document into two-series ASCII file.

(C) Introduction of JCAMP-DX file into topSpin2.1 operating system

  1. In TopSpin2.1, File > Open
  2. Check "Open NMR data stored in special formats"
  3. Click OK button
  4. Click Browse button. Select copy-29Si-nanom-4BL.dx from the DeskTop of Windows then click Convert from JDX button
  5. Click OK button
  6. Denoised copy-29Si-nanom-4BL file is ready for processing in TopSpin2.1

Solid-state NMR bibliography for:

Aluminum-27
Antimony-121/123
Arsenic-75
Barium-135/137
Beryllium-9
Bismuth-209
Boron-11
Bromine-79/81
Calcium-43
Cesium-133
Chlorine-35/37
Chromium-53
Cobalt-59
Copper-63/65
Deuterium-2
Gallium-69/71
Germanium-73
Gold-197
Hafnium-177/179
Indium-113/115
Iodine-127
Iridium-191/193
Krypton-83
Lanthanum-139
Lithium-7
Magnesium-25
Manganese-55
Mercury-201
Molybdenum-95/97
Neon-21
Nickel-61
Niobium-93
Nitrogen-14
Osmium-189
Oxygen-17
Palladium-105
Potassium-39/41
Rhenium-185/187
Rubidium-85/87
Ruthenium-99/101
Scandium-45
Sodium-23
Strontium-87
Sulfur-33
Tantalum-181
Titanium-47/49
Vanadium-51
Xenon-131
Zinc-67
Zirconium-91
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